miRBase entry: ppc-mir-8328

Stem-loop ppc-mir-8328

Accession

MI0027031

Description

Pristionchus pacificus ppc-mir-8328 precursor miRNA

Sequence

UUUUGGUCAGUAGGAGCAUGCCUgauaaaugaaugcagUAAUGCUCUUCCUUGCCGAAAGA
(((((((.((.((((((((..(((((......)).)))..)))))))).)).)))))))..

Structure

--       C  U        GC   -  aa 
  UUUUGGU AG AGGAGCAU  CUg au  a
  ||||||| || ||||||||  ||| ||   
  AAAGCCG UC UUCUCGUA  gac ua  u
AG       U  C        AU   g  ag

Annotation confidence Not enough data

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Genome context

ABKE03000015.1: 218351-218411 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8328

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8328-5p

Accession	MIMAT0033200
Description	Pristionchus pacificus ppc-miR-8328-5p mature miRNA
Sequence	1 - UUUUGGUCAGUAGGAGCAUGCCU - 23
Evidence	experimental Illumina [1]

Mature ppc-miR-8328-3p

Accession	MIMAT0033201
Description	Pristionchus pacificus ppc-miR-8328-3p mature miRNA
Sequence	39 - UAAUGCUCUUCCUUGCCGAAAGA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260