Stem-loop ppc-mir-8338-2

Accession

MI0027042

Description

Pristionchus pacificus ppc-mir-8338-2 precursor miRNA

Gene family

MIPF0002060; mir-8338

Sequence

AUCUGCCACUACUAACCGUGucguguaguagugaguacgaCACGGUUAGUAGUGGCAGAUG
((((((((((((((((((((((((((........)))))))))))))))))))))))))).

Structure

-                          agu 
 AUCUGCCACUACUAACCGUGucgugu   a
 ||||||||||||||||||||||||||    
 UAGACGGUGAUGAUUGGCACagcaug   g
G                          agu 

Annotation confidence Not enough data

Genome context

ABKE03000062.1: 2095741-2095801 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-8338-2

Mature ppc-miR-8338-5p

• Accession: MIMAT0033165
• Description: Pristionchus pacificus ppc-miR-8338-5p mature miRNA
• Sequence: 1 - AUCUGCCACUACUAACCGUG - 20
• Evidence: experimental ; Illumina [1]

Mature ppc-miR-8338-2-3p

• Accession: MIMAT0033222
• Description: Pristionchus pacificus ppc-miR-8338-2-3p mature miRNA
• Sequence: 41 - CACGGUUAGUAGUGGCAGAUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260