miRBase entry: ppc-mir-8340

Stem-loop ppc-mir-8340

Accession

MI0027044

Description

Pristionchus pacificus ppc-mir-8340 precursor miRNA

Sequence

GUCGCGGAAUGCCCGUGUAUGCcggccauuggaugugcUUACCGGGCGCAUCUGCGACCU
((((((((.((((((.(((.((((.((...)).)).)).)))))))))..))))))))..

Structure

--        -A      U   U  -  g  a 
  GUCGCGGA  UGCCCG GUA GC cg cc  
  ||||||||  |||||| ||| || || || u
  CAGCGUCU  GCGGGC CAU cg gu gg  
UC        AC      -   U  u  a  u

Annotation confidence Not enough data

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Genome context

ABKE03000031.1: 559439-559498 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-8340

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8340-5p

Accession	MIMAT0033225
Description	Pristionchus pacificus ppc-miR-8340-5p mature miRNA
Sequence	1 - GUCGCGGAAUGCCCGUGUAUGC - 22
Evidence	experimental SOLiD [1]

Mature ppc-miR-8340-3p

Accession	MIMAT0033226
Description	Pristionchus pacificus ppc-miR-8340-3p mature miRNA
Sequence	39 - UUACCGGGCGCAUCUGCGACCU - 60
Evidence	experimental SOLiD [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260