miRBase entry: ppc-mir-8348

Stem-loop ppc-mir-8348


Accession
MI0027054
Description
Pristionchus pacificus ppc-mir-8348 precursor miRNA


Sequence

ACUCCGAGUUUCGAUCGGGAACagcauaugagacgaguUCCCGAAGAAUCUCAGAGUCA
((((.(((.(((..((((((((..............)))))))).))).))).))))..

Structure
--    C   U   GA        agcaua 
  ACUC GAG UUC  UCGGGAAC      u
  |||| ||| |||  ||||||||       
  UGAG CUC AAG  AGCCCUug      g
AC    A   U   -A        agcaga 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 226430-226488 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from ppc-mir-8348
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8348-5p

Accession MIMAT0033244
Description Pristionchus pacificus ppc-miR-8348-5p mature miRNA
Sequence 1 - ACUCCGAGUUUCGAUCGGGAAC - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8348-3p

Accession MIMAT0033245
Description Pristionchus pacificus ppc-miR-8348-3p mature miRNA
Sequence 39 - UCCCGAAGAAUCUCAGAGUCA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260