miRBase entry: ppc-mir-8349

Stem-loop ppc-mir-8349


Accession
MI0027055
Description
Pristionchus pacificus ppc-mir-8349 precursor miRNA


Sequence

UUUUGAUUGCACGAUAACGUCAgauagaugcugcugcgaauucugCUGCUAUCGAGCCAAUCAAAACC
((((((((((.(((((.((.((((....(((....)))...)))).)).))))).).)))))))))..

Structure
--         - A     A  U    uaga   u 
  UUUUGAUUG C CGAUA CG CAga    ugc g
  ||||||||| | ||||| || ||||    |||  
  AAAACUAAC G GCUAU GU gucu    gcg c
CC         C A     C  C    -uaa   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ABKE03000108.1: 80459-80526 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-8349
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8349-5p

Accession MIMAT0033246
Description Pristionchus pacificus ppc-miR-8349-5p mature miRNA
Sequence 1 - UUUUGAUUGCACGAUAACGUCA - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8349-3p

Accession MIMAT0033247
Description Pristionchus pacificus ppc-miR-8349-3p mature miRNA
Sequence 46 - CUGCUAUCGAGCCAAUCAAAACC - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260