miRBase entry: ppc-mir-8218b

Stem-loop ppc-mir-8218b


Accession
MI0027056
Description
Pristionchus pacificus ppc-mir-8218b precursor miRNA


Sequence

CGAGGGCCACCAGGGUCUGAGCUauagcaaaagaaugucgCUCAGCCGUGAUGACCCUCAAG
.(((((.((.((.((.((((((.(((.........))).)))))))).)).)).)))))...

Structure
--C     C  C  G  U      U   gca 
   GAGGG CA CA GG CUGAGC aua   a
   ||||| || || || |||||| |||   a
   CUCCC GU GU CC GACUCg ugu   a
GAA     A  A  G  -      c   aag 


Annotation confidence Not enough data
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Genome context
ABKE03000019.1: 82038-82099 [-]

Database links

Mature ppc-miR-8218b-5p

Accession MIMAT0033248
Description Pristionchus pacificus ppc-miR-8218b-5p mature miRNA
Sequence 1 - CGAGGGCCACCAGGGUCUGAGCU - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8218b-3p

Accession MIMAT0033249
Description Pristionchus pacificus ppc-miR-8218b-3p mature miRNA
Sequence 41 - CUCAGCCGUGAUGACCCUCAAG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260