miRBase entry: ppc-mir-8282b

Stem-loop ppc-mir-8282b


Accession
MI0027057
Description
Pristionchus pacificus ppc-mir-8282b precursor miRNA


Sequence

UUACCGAUAAUGACGUCAUUGCUguaauucgaucagcUAUGGCAUUGUUCUUGGUGACA
(((((((.(((((.(((((.((((.........)))).))))).))))).)))))))..

Structure
--       U     C     U    uaa 
  UUACCGA AAUGA GUCAU GCUg   u
  ||||||| ||||| ||||| ||||   u
  AGUGGUU UUGUU CGGUA cgac   c
AC       C     A     U    uag 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 226545-226603 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from ppc-mir-8282b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8282b-5p

Accession MIMAT0033250
Description Pristionchus pacificus ppc-miR-8282b-5p mature miRNA
Sequence 1 - UUACCGAUAAUGACGUCAUUGCU - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8282b-3p

Accession MIMAT0033251
Description Pristionchus pacificus ppc-miR-8282b-3p mature miRNA
Sequence 38 - UAUGGCAUUGUUCUUGGUGACA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260