miRBase entry: ppc-mir-8352

Stem-loop ppc-mir-8352


Accession
MI0027060
Description
Pristionchus pacificus ppc-mir-8352 precursor miRNA


Sequence

UGUGCGUCGAUUGAUUGCCAACUggaucguuaagcacgUUGGCAGUGUCUCGAGGCAUAGU
(((((.((((...(((((((((((..........)).)))))))))...)))).)))))..

Structure
--     G    UUG         -  gauc 
  UGUGC UCGA   AUUGCCAAC Ug    g
  ||||| ||||   ||||||||| ||     
  AUACG AGCU   UGACGGUUg ac    u
UG     G    CUG         c  gaau 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 237989-238049 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from ppc-mir-8352
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8352-5p

Accession MIMAT0033256
Description Pristionchus pacificus ppc-miR-8352-5p mature miRNA
Sequence 1 - UGUGCGUCGAUUGAUUGCCAACU - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8352-3p

Accession MIMAT0033257
Description Pristionchus pacificus ppc-miR-8352-3p mature miRNA
Sequence 39 - UUGGCAGUGUCUCGAGGCAUAGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260