miRBase entry: ppc-mir-8282c

Stem-loop ppc-mir-8282c


Accession
MI0027061
Description
Pristionchus pacificus ppc-mir-8282c precursor miRNA


Sequence

UUACCACGAAUUAUUCCAUAUCuguacugccaucagaUAUGGAGGUAUUCUUGGUAUCA
.(((((.((((..(((((((((((.........)))))))))))..)))).)))))...

Structure
--U     C    UA           uac 
   UACCA GAAU  UUCCAUAUCug   u
   ||||| ||||  |||||||||||   g
   AUGGU CUUA  GAGGUAUagac   c
ACU     U    UG           uac 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 227223-227281 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from ppc-mir-8282c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8282c-5p

Accession MIMAT0033258
Description Pristionchus pacificus ppc-miR-8282c-5p mature miRNA
Sequence 1 - UUACCACGAAUUAUUCCAUAUC - 22
Evidence experimental
Illumina [1]

Mature ppc-miR-8282c-3p

Accession MIMAT0033259
Description Pristionchus pacificus ppc-miR-8282c-3p mature miRNA
Sequence 38 - UAUGGAGGUAUUCUUGGUAUCA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260