miRBase entry: ppc-mir-8354

Stem-loop ppc-mir-8354

Accession

MI0027066

Description

Pristionchus pacificus ppc-mir-8354 precursor miRNA

Sequence

UAUGAUUGUCUAGUAUGCAACUGUcgauguggaacgcacGGUUUCUGCUAGAAGUCAUAGC
(((((((.(((((((.(.((((((((........)).)))))).)))))))))))))))..

Structure

--       G       U C      -  aug 
  UAUGAUU UCUAGUA G AACUGU cg   u
  ||||||| ||||||| | |||||| ||    
  AUACUGA AGAUCGU C UUGGca gc   g
CG       -       - U      c  aag

Annotation confidence Not enough data

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Genome context

ABKE03000119.1: 316679-316739 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-8354

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-8354-5p

Accession	MIMAT0033268
Description	Pristionchus pacificus ppc-miR-8354-5p mature miRNA
Sequence	1 - UAUGAUUGUCUAGUAUGCAACUGU - 24
Evidence	experimental Illumina [1]

Mature ppc-miR-8354-3p

Accession	MIMAT0033269
Description	Pristionchus pacificus ppc-miR-8354-3p mature miRNA
Sequence	40 - GGUUUCUGCUAGAAGUCAUAGC - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260