miRBase entry: ppc-mir-8356a

Stem-loop ppc-mir-8356a


Accession
MI0027069
Description
Pristionchus pacificus ppc-mir-8356a precursor miRNA
Gene family
MIPF0001997; mir-8356


Sequence

AAUUUGAGACUCGCAUGAUUGCAuaguaugaugaagaugUAUCAUGUUGAUUCUCAAAUUCA
(((((((((.(((((((((.((((............)))))))))).))).)))))))))..

Structure
--         C   -      U    aguau 
  AAUUUGAGA UCG CAUGAU GCAu     g
  ||||||||| ||| |||||| ||||      
  UUAAACUCU AGU GUACUA Ugua     a
AC         U   U      -    gaagu 


Annotation confidence Not enough data
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Genome context
ABKE03000073.1: 236205-236266 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from ppc-mir-8356a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-8356a-5p

Accession MIMAT0033274
Description Pristionchus pacificus ppc-miR-8356a-5p mature miRNA
Sequence 1 - AAUUUGAGACUCGCAUGAUUGCA - 23
Evidence experimental
Illumina [1]

Mature ppc-miR-8356a-3p

Accession MIMAT0033275
Description Pristionchus pacificus ppc-miR-8356a-3p mature miRNA
Sequence 40 - UAUCAUGUUGAUUCUCAAAUUCA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260