Stem-loop str-mir-1

Accession

MI0027080

Description

Strongyloides ratti str-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Sequence

CAUGCUUCUUUAUAGUGCCAUAuagcaagagaacuuaUGGAAUGUAAAGAAGUAUGCA
((((((((((((((...(((((.((........)))))))..))))))))))))))..

Structure

--              GUG     u  caa 
  CAUGCUUCUUUAUA   CCAUA ag   g
  ||||||||||||||   ||||| ||    
  GUAUGAAGAAAUGU   GGUau uc   a
AC              -AA     -  aag 

Annotation confidence Not enough data

Genome context

Sratti_scf00003_Chr01: 1880821-1880878 [+]

Mature str-miR-1-5p

• Accession: MIMAT0033296
• Description: Strongyloides ratti str-miR-1-5p mature miRNA
• Sequence: 1 - CAUGCUUCUUUAUAGUGCCAUA - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-1-3p

• Accession: MIMAT0033297
• Description: Strongyloides ratti str-miR-1-3p mature miRNA
• Sequence: 38 - UGGAAUGUAAAGAAGUAUGCA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260