miRBase entry: str-mir-7880b-3

Stem-loop str-mir-7880b-3

Accession

MI0027087

Description

Strongyloides ratti str-mir-7880b-3 precursor miRNA

Sequence

UGGUUGGAUCAGUUUGCAAACAuauaaucuucaaauuuuUUUGCGACCGAAUCCAGGCCACG
(((((((((..(.(((((((...................))))))).)..))))).))))..

Structure

--    -     CA U       CAuauaau 
  UGGU UGGAU  G UUGCAAA        c
  |||| |||||  | |||||||        u
  ACCG ACCUA  C AGCGUUU        u
GC    G     AG C       uuuuaaac

Annotation confidence Not enough data

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Genome context

Sratti_scf00001_ChrX: 2081351-2081412 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880b-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature str-miR-7880b-3p

Accession	MIMAT0033305
Description	Strongyloides ratti str-miR-7880b-3p mature miRNA
Sequence	40 - UUUGCGACCGAAUCCAGGCCACG - 62
Evidence	experimental Illumina [1]

Mature str-miR-7880b-3-5p

Accession	MIMAT0033309
Description	Strongyloides ratti str-miR-7880b-3-5p mature miRNA
Sequence	1 - UGGUUGGAUCAGUUUGCAAACA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260