miRBase entry: str-mir-7880e-1

Stem-loop str-mir-7880e-1


Accession
MI0027093
Description
Strongyloides ratti str-mir-7880e-1 precursor miRNA


Sequence

UGGACUGGAUAGUUGCAAACAuaaucuuuauuuauuUUUGCGACCAAAUCCAGGCCACG
(((.((((((.((((((((.((((.......)))).))))))))...)))))).)))..

Structure
--   A      --A        C    uc 
  UGG CUGGAU   GUUGCAAA Auaa  u
  ||| ||||||   |||||||| ||||  u
  ACC GACCUA   CAGCGUUU uauu  u
GC   G      AAC        u    ua 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_ChrX: 2081653-2081711 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from str-mir-7880e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-7880e-5p

Accession MIMAT0033319
Description Strongyloides ratti str-miR-7880e-5p mature miRNA
Sequence 1 - UGGACUGGAUAGUUGCAAACA - 21
Evidence experimental
Illumina [1]

Mature str-miR-7880e-3p

Accession MIMAT0033320
Description Strongyloides ratti str-miR-7880e-3p mature miRNA
Sequence 37 - UUUGCGACCAAAUCCAGGCCACG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260