miRBase entry: str-mir-7880e-2

Stem-loop str-mir-7880e-2


Accession
MI0027101
Description
Strongyloides ratti str-mir-7880e-2 precursor miRNA


Sequence

UGGUUGGAAUGGUCAGCAAAUAuauuuuuauauaaguauauacauuaUUUGCGACCAAAUCCAGGCCACG
((((((((.(((((.(((((((......((((....)))).....))))))))))))..)))).))))..

Structure
--    -    -A     A       uauuuu    u 
  UGGU UGGA  UGGUC GCAAAUA      uaua a
  |||| ||||  ||||| |||||||      ||||  
  ACCG ACCU  ACCAG CGUUUau      auau a
GC    G    AA     -       -uacau    g 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_ChrX: 2081103-2081172 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from str-mir-7880e-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-7880e-3p

Accession MIMAT0033320
Description Strongyloides ratti str-miR-7880e-3p mature miRNA
Sequence 48 - UUUGCGACCAAAUCCAGGCCACG - 70
Evidence experimental
Illumina [1]

Mature str-miR-7880e-2-5p

Accession MIMAT0033335
Description Strongyloides ratti str-miR-7880e-2-5p mature miRNA
Sequence 1 - UGGUUGGAAUGGUCAGCAAAUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260