Stem-loop str-mir-7880j

Accession

MI0027109

Description

Strongyloides ratti str-mir-7880j precursor miRNA

Sequence

UGGUCGGAAUAGUUGCAAAUUuuauucuaauuuuuuaaUUUGCGACCUAUUUCCAGGCUACU
(((((((((((((((((((((...............))))))))).))).)))).)))))..

Structure

--     -    -   -         uuauuc 
  UGGUC GGAA UAG UUGCAAAUU      u
  ||||| |||| ||| |||||||||      a
  AUCGG CCUU AUC AGCGUUUaa      a
UC     A    U   C         uuuuuu 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 396012-396073 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880j

Mature str-miR-7880j-5p

• Accession: MIMAT0033350
• Description: Strongyloides ratti str-miR-7880j-5p mature miRNA
• Sequence: 1 - UGGUCGGAAUAGUUGCAAAUU - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880j-3p

• Accession: MIMAT0033351
• Description: Strongyloides ratti str-miR-7880j-3p mature miRNA
• Sequence: 39 - UUUGCGACCUAUUUCCAGGCUACU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260