miRBase entry: str-mir-92

Stem-loop str-mir-92


Accession
MI0027112
Description
Strongyloides ratti str-mir-92 precursor miRNA


Sequence

AGGUUGGAGCAUGCGCCAUAUUuuugauagauuauaauaaUAUUGCACACGUCCCGGCCUGA
(((((((.((.((.((.(((((.(((........))).))))).)).)).)).)))))))..

Structure
--       A  A  C  C     u   aua 
  AGGUUGG GC UG GC AUAUU uug   g
  ||||||| || || || ||||| |||    
  UCCGGCC UG AC CG UAUaa aau   a
AG       C  C  A  U     u   auu 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_Chr02: 4795288-4795349 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from str-mir-92
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-92-5p

Accession MIMAT0033356
Description Strongyloides ratti str-miR-92-5p mature miRNA
Sequence 1 - AGGUUGGAGCAUGCGCCAUAUU - 22
Evidence experimental
Illumina [1]

Mature str-miR-92-3p

Accession MIMAT0033357
Description Strongyloides ratti str-miR-92-3p mature miRNA
Sequence 41 - UAUUGCACACGUCCCGGCCUGA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260