miRBase entry: str-mir-7880n

Stem-loop str-mir-7880n


Accession
MI0027118
Description
Strongyloides ratti str-mir-7880n precursor miRNA


Sequence

UGAUGGAUAAGGAGCAAAUUugauugagaaaacuuuaaUUUGCAACUUUAUCCAUUUCACU
.(((((((((((.(((((((................)))))))..))))))))))).....

Structure
----U           -A       ugauuga 
     GAUGGAUAAGG  GCAAAUU       g
     |||||||||||  |||||||        
     UUACCUAUUUC  CGUUUaa       a
UCACU           AA       uuucaaa 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_Chr01: 396989-397049 [-]
Clustered miRNAs
20 other miRNAs are < 10 kb from str-mir-7880n
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-7880n-5p

Accession MIMAT0033368
Description Strongyloides ratti str-miR-7880n-5p mature miRNA
Sequence 1 - UGAUGGAUAAGGAGCAAAUU - 20
Evidence experimental
Illumina [1]

Mature str-miR-7880n-3p

Accession MIMAT0033369
Description Strongyloides ratti str-miR-7880n-3p mature miRNA
Sequence 39 - UUUGCAACUUUAUCCAUUUCACU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260