miRBase entry: str-mir-7880o

Stem-loop str-mir-7880o


Accession
MI0027120
Description
Strongyloides ratti str-mir-7880o precursor miRNA


Sequence

UGGUUGGAUGAGAAGCAAAUUuuguuuuuacuuauucaaUUUGCGACUAUAUCCAGGCCAUU
((((((((((((..(((((((..((........))..)))))))..)).)))))).))))..

Structure
--    -      -  AA       uu  uuu 
  UGGU UGGAUG AG  GCAAAUU  gu   u
  |||| |||||| ||  |||||||  ||    
  ACCG ACCUAU UC  CGUUUaa  ua   a
UU    G      A  AG       cu  uuc 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_Chr01: 396672-396733 [-]
Clustered miRNAs
20 other miRNAs are < 10 kb from str-mir-7880o
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-7880o-5p

Accession MIMAT0033372
Description Strongyloides ratti str-miR-7880o-5p mature miRNA
Sequence 1 - UGGUUGGAUGAGAAGCAAAUU - 21
Evidence experimental
Illumina [1]

Mature str-miR-7880o-3p

Accession MIMAT0033373
Description Strongyloides ratti str-miR-7880o-3p mature miRNA
Sequence 40 - UUUGCGACUAUAUCCAGGCCAUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260