Stem-loop str-mir-7880t

Accession

MI0027132

Description

Strongyloides ratti str-mir-7880t precursor miRNA

Sequence

GCACUUGGUUGGAAGCAAAUAugauauaaguuaauuuuuguaauuaauuuaaaauauuaUUUGCGACCAAAUCAUGUGCAU
((((.(((((((..(((((((..((.((((((((((.....))))))))))..))..)))))))..)).))))).))))..

Structure

--    U     -  AA       ug  -a          u 
  GCAC UGGUU GG  GCAAAUA  au  uaaguuaauu u
  |||| ||||| ||  |||||||  ||  |||||||||| u
  CGUG ACUAA CC  CGUUUau  ua  auuuaauuaa g
UA    U     A  AG       ua  aa          u 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 397314-397394 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880t

Mature str-miR-7880t-5p

• Accession: MIMAT0033396
• Description: Strongyloides ratti str-miR-7880t-5p mature miRNA
• Sequence: 1 - GCACUUGGUUGGAAGCAAAUA - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880t-3p

• Accession: MIMAT0033397
• Description: Strongyloides ratti str-miR-7880t-3p mature miRNA
• Sequence: 60 - UUUGCGACCAAAUCAUGUGCAU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260