miRBase entry: str-mir-8392

Stem-loop str-mir-8392


Accession
MI0027160
Description
Strongyloides ratti str-mir-8392 precursor miRNA


Sequence

AACUCUUGAUUUCUGUAGAAUuuuguuacauuucuuaaUUCACCGGAAACCAGGAGAGG
..((((((.((((((..(((((..(........)..)))))..)))))).))))))...

Structure
-AA      A      UA     uu uua 
   CUCUUG UUUCUG  GAAUu  g   c
   |||||| ||||||  |||||  |    
   GAGGAC AAAGGC  CUUaa  c   a
GGA      C      CA     uu uuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Sratti_scf00001_Chr02: 3569727-3569785 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from str-mir-8392
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-8392-5p

Accession MIMAT0033452
Description Strongyloides ratti str-miR-8392-5p mature miRNA
Sequence 1 - AACUCUUGAUUUCUGUAGAAU - 21
Evidence experimental
Illumina [1]

Mature str-miR-8392-3p

Accession MIMAT0033453
Description Strongyloides ratti str-miR-8392-3p mature miRNA
Sequence 39 - UUCACCGGAAACCAGGAGAGG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260