miRBase entry: str-mir-8396

Stem-loop str-mir-8396


Accession
MI0027175
Description
Strongyloides ratti str-mir-8396 precursor miRNA


Sequence

CGGGUUUAUCAUUGCCAAACUcaaaagcguuuuguaagUUUGGCACUGUAUAGGCUCCAA
.((((((((((.((((((((((((((...)))))..))))))))).)).))))))))...

Structure
--C        -  U         --     g 
   GGGUUUAU CA UGCCAAACU  caaaa  
   |||||||| || |||||||||  ||||| c
   CUCGGAUA GU ACGGUUUga  guuuu  
AAC        U  C         au     g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Sratti_scf00002_Chr01: 94485-94544 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from str-mir-8396
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-8396-5p

Accession MIMAT0033482
Description Strongyloides ratti str-miR-8396-5p mature miRNA
Sequence 1 - CGGGUUUAUCAUUGCCAAACU - 21
Evidence experimental
Illumina [1]

Mature str-miR-8396-3p

Accession MIMAT0033483
Description Strongyloides ratti str-miR-8396-3p mature miRNA
Sequence 39 - UUUGGCACUGUAUAGGCUCCAA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260