Stem-loop str-mir-7880y

Accession

MI0027183

Description

Strongyloides ratti str-mir-7880y precursor miRNA

Gene family

MIPF0002015; mir-7880

Sequence

GGUCAGAUGAUGUCCACAAAUUaguauuuaagaaacuuaaUUUGCGACUAAAUCUAGACC
((((((((...(((..(((((((((.........)).))))))).)))...)))).))))

Structure

    -    GAU   CA       -  auu 
GGUC AGAU   GUC  CAAAUUa gu   u
|||| ||||   |||  ||||||| ||   a
CCAG UCUA   CAG  GUUUaau ca   a
    A    AAU   -C       u  aag 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 395909-395968 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880y

Mature str-miR-7880y-5p

• Accession: MIMAT0033498
• Description: Strongyloides ratti str-miR-7880y-5p mature miRNA
• Sequence: 1 - GGUCAGAUGAUGUCCACAAAUU - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880y-3p

• Accession: MIMAT0033499
• Description: Strongyloides ratti str-miR-7880y-3p mature miRNA
• Sequence: 41 - UUUGCGACUAAAUCUAGACC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260