miRBase entry: sma-mir-36b

Stem-loop sma-mir-36b


Accession
MI0027198
Description
Schistosoma mansoni sma-mir-36b precursor miRNA

Literature search
3 open access papers mention sma-mir-36b
(4 sentences)

Sequence

auaaaagcagcaucugaAGGGAAUGUCUGUUCGGUUUGUgucaucgugguuacuuguuagguacuacuuaauaauguaacuauuuuucaguacaCCACCGGGUAGACAUUCAUCCGCagaugucuugcuguaaa
.....(((((((((((..(((((((((((((((((..(((((...(((((((((((((((((...))))))))).))))))))......).)))).))))))))))))))).))..)))))))..)))).....

Structure
auaaa    --       aA  -               UU    - ---auc        -         a 
     agca  gcaucug  GG GAAUGUCUGUUCGGU  GUgu c      gugguuac uuguuaggu  
     ||||  |||||||  || |||||||||||||||  |||| |      |||||||| ||||||||| c
     ucgu  uguagaC  CU CUUACAGAUGGGCCA  Caca g      uaucaaug aauaauuca  
aaaug    uc       GC  A               -C    u acuuuu        u         u 


Annotation confidence Not enough data
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Genome context
Chr_1: 57514904-57515037 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sma-mir-36b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-36b-5p

Accession MIMAT0033514
Description Schistosoma mansoni sma-miR-36b-5p mature miRNA
Sequence 18 - AGGGAAUGUCUGUUCGGUUUGU - 39
Evidence experimental
Illumina [1], SOLiD [1]

Mature sma-miR-36b-3p

Accession MIMAT0033515
Description Schistosoma mansoni sma-miR-36b-3p mature miRNA
Sequence 95 - CCACCGGGUAGACAUUCAUCCGC - 117
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402