miRBase entry: sma-mir-8406

Stem-loop sma-mir-8406


Accession
MI0027199
Description
Schistosoma mansoni sma-mir-8406 precursor miRNA


Sequence

ucacaaguauuaugagcacuauaaauaacaguagCAAAUGCAUCUAGAUGAAUguuuuaguaaauauuuuaggaaauguuucaagguauuguaacuaaauuauugaUUUUCUUAAGAUUUAUUUUGuuguucuuaguguguaaaaguaacuauu
.....((((((....((((((..(((((((.....(((((.((((((((.((((.((((((.((((((((.((((...))))))))))))...)))))).)))).)))).....)))).))))))))))))..)))))).....))).)))...

Structure
ucaca   -   -auga      ua       guagC     C    -----    G    u      --a        a    a 
     agu auu     gcacua  aauaaca     AAAUG AUCU     AGAU AAUg uuuagu   aauauuuu ggaa  
     ||| |||     ||||||  |||||||     ||||| ||||     |||| |||| ||||||   |||||||| |||| u
     uca uga     ugugau  uuguuGU     UUUAU UAGA     UUUa uuau aaauca   uuauggaa cuuu  
--uua   a   aaaug      uc       -----     U    AUUCU    g    u      aug        -    g 


Annotation confidence Not enough data
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Genome context
Chr_1: 57517953-57518106 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sma-mir-8406
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-8406-5p

Accession MIMAT0033516
Description Schistosoma mansoni sma-miR-8406-5p mature miRNA
Sequence 35 - CAAAUGCAUCUAGAUGAAU - 53
Evidence experimental
SOLiD [1]

Mature sma-miR-8406-3p

Accession MIMAT0033517
Description Schistosoma mansoni sma-miR-8406-3p mature miRNA
Sequence 107 - UUUUCUUAAGAUUUAUUUUG - 126
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402