miRBase entry: sma-mir-8421

Stem-loop sma-mir-8421


Accession
MI0027214
Description
Schistosoma mansoni sma-mir-8421 precursor miRNA


Sequence

aucuucuaugaaaagauagagucguaagCUCCCUGUACGUUAUUCCAguacauuugcuuuuuuuguuaguugcacuuuuGGAUCUAACAGUAUAAGGUuucacuuuuuucuagucaucaguuuuu
.....((((((..(((.(((((.(.(((((...(((((((((.(((((.......(((.........))).......)))))..)))).))))).)))))))))))..)))..)))).)).....

Structure
aucuu  -    aa   -u     c u     CCC     -    -U     uacauuu   uuu 
     cu auga  aga  agagu g aagCU   UGUAC GUUA  UCCAg       gcu   u
     || ||||  |||  ||||| | |||||   ||||| ||||  |||||       |||   u
     ga uacu  ucu  uuuca c uuUGG   AUAUG CAAU  AGGuu       uga   u
uuuuu  c    ga   uu     - -     --A     A    CU     uucacgu   uug 


Annotation confidence Not enough data
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Genome context
Chr_2: 5578339-5578463 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sma-mir-8421
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sma-miR-8421-5p

Accession MIMAT0033546
Description Schistosoma mansoni sma-miR-8421-5p mature miRNA
Sequence 29 - CUCCCUGUACGUUAUUCCA - 47
Evidence experimental
SOLiD [1]

Mature sma-miR-8421-3p

Accession MIMAT0033547
Description Schistosoma mansoni sma-miR-8421-3p mature miRNA
Sequence 80 - GGAUCUAACAGUAUAAGGU - 98
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402