Stem-loop sma-mir-8427

Accession

MI0027220

Description

Schistosoma mansoni sma-mir-8427 precursor miRNA

Sequence

aaaacgacaugguuuuucaugguagcauguugucaucugaaGCUAAUAAGUCUAUUUUAUAuccaaaacgagcuggagaguuauguuuauguGGAACAUCAUGUUCGCCUUgucugauugaaaauauguuccacggaauaucaugcacacg
.......((((((.((((.(((.((((((((.(((((.((.((.((((.(....((((((((...(((((((((....)))).)))))))))))))...).)))).))....)).)).))).))))))))))).)))).))))))......

Structure

aaaacga      u    a   u        g   -  u  ---a  U    A UCUA        cca     -    g 
       cauggu uuuc ugg agcauguu uca uc ga    GC AAUA G    UUUUAUAu   aaacg agcu g
       |||||| |||| ||| |||||||| ||| || ||    || |||| |    ||||||||   ||||| ||||  
       guacua aagg acc uuguauaa agu ag cu    CG UUGU C    AAGGugua   uuugu uuga a
-gcacac      u    c   -        a   u  u  gUUC  C    A -UAC        ---     a    g 

Annotation confidence Not enough data

Genome context

Chr_2: 5576263-5576413 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sma-mir-8427

Mature sma-miR-8427-5p

• Accession: MIMAT0033558
• Description: Schistosoma mansoni sma-miR-8427-5p mature miRNA
• Sequence: 42 - GCUAAUAAGUCUAUUUUAUA - 61
• Evidence: experimental ; SOLiD [1]

Mature sma-miR-8427-3p

• Accession: MIMAT0033559
• Description: Schistosoma mansoni sma-miR-8427-3p mature miRNA
• Sequence: 93 - GGAACAUCAUGUUCGCCUU - 111
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402