miRBase entry: sma-mir-281

Stem-loop sma-mir-281


Accession
MI0027237
Description
Schistosoma mansoni sma-mir-281 precursor miRNA

Literature search
2 open access papers mention sma-mir-281
(4 sentences)

Sequence

acuaacauauuagauaauguguuauugaauuaguucugaugGAGAGAGCACUUUUAUGACGGAaauaaugaaaaucuucgaauuuuauugaaguuccauaaUGUCAUGGAGUUGCUCUCUAUAucagguuaguccaagcaucauaaucuauguggauaa
.....(((((.((((.((((((..(((.((((..(((((((.((((((((.(((((((((((((.((((((((.((...)).))))))))...)))).....))))))))).)))))))).))))))).)))).)))))).))).))))))))).....

Structure
acuaa     u    a   -   ua   a    gu       G        C         -----    --a        a  u 
     cauau agau aug ugu  uug auua  ucugaug AGAGAGCA UUUUAUGAC     GGAa   uaaugaaa uc  
     ||||| |||| ||| |||  ||| ||||  ||||||| |||||||| |||||||||     ||||   |||||||| || u
     gugua ucua uac acg  aac ugau  ggacuAU UCUCUCGU GAGGUACUG     ccuu   guuauuuu ag  
aauag     -    a   u   --   c    -u       A        U         Uaaua    gaa        a  c 


Annotation confidence Not enough data
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Genome context
Chr_4: 27195906-27196064 [-]

Database links

Mature sma-miR-281-5p

Accession MIMAT0033592
Description Schistosoma mansoni sma-miR-281-5p mature miRNA
Sequence 42 - GAGAGAGCACUUUUAUGACGGA - 63
Evidence experimental
Illumina [1], SOLiD [1]

Mature sma-miR-281-3p

Accession MIMAT0033593
Description Schistosoma mansoni sma-miR-281-3p mature miRNA
Sequence 102 - UGUCAUGGAGUUGCUCUCUAUA - 123
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402