miRBase entry: sma-mir-1a

Stem-loop sma-mir-1a


Accession
MI0027256
Description
Schistosoma mansoni sma-mir-1a precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
4 open access papers mention sma-mir-1a
(6 sentences)

Sequence

gguaguaguaguaauaguaguagugauuauaUGGAAUGUGGCGAAGUAUGGucuaugguuacuagaaucaucaugaucuuaauaguauuaucuuuacuauuauuauuauuaaugua
..((((((((((((((((((..(((((..((((((.(((((.((....((((........))))...)).))))).)))..)))..)))))..)))))))))))))))))).....

Structure
---gg                  ua     ua   --   A     C  AGUA    cua 
     uaguaguaguaauaguag  gugau  uaU  GGA UGUGG GA    UGGu   u
     ||||||||||||||||||  |||||  |||  ||| ||||| ||    ||||    
     auuauuauuauuaucauu  uauua  aua  ucu guacu cu    auca   g
augua                  uc     ug   au   a     a  -aag    uug 


Annotation confidence Not enough data
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Genome context
Chr_W: 827970-828085 [-]

Database links

Mature sma-miR-1a-5p

Accession MIMAT0033630
Description Schistosoma mansoni sma-miR-1a-5p mature miRNA
Sequence 32 - UGGAAUGUGGCGAAGUAUGG - 51
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402