Stem-loop sequence sma-mir-2162

Accession

MI0027274 (change log)

Description

Schistosoma mansoni miR-2162 stem-loop

Gene family

MIPF0001950; mir-2162

Literature search

2 open access papers mention sma-mir-2162
(4 sentences)

Stem-loop

   aggac    --cua ag    c u     -    cc     a    au     gg   g       u     a  c 
5'      caug     a  augu g uugga ugga  ucucu gggg  gagug  aug uugcaua auaca ug u
        ||||     |  |||| | ||||| ||||  ||||| ||||  |||||  ||| ||||||| ||||| ||  
3'      guac     u  uaca c aacuu aucu  aggga cccc  cucac  ugc aacguau uaugu ac g
   auuaa    uuucg ga    u c     c    -c     -    au     uu   -       -     a  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WTSI5): SC_0049: 36149-36295 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0027274

Mature sequence sma-miR-2162-5p

• Accession: MIMAT0033665
• Sequence: 47 - agugggaugguugcauauauac - 68
• Evidence: experimental; Illumina [1], SOLiD [1]

Mature sequence sma-miR-2162-3p

• Accession: MIMAT0033666
• Sequence: 82 - uauuaugcaacguuucacucu - 102
• Evidence: experimental; Illumina [1], SOLiD [1]

References

1. PMID:24069470 "Sex-biased expression of microRNAs in Schistosoma mansoni" Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M PLoS Negl Trop Dis. 7:e2402(2013).