Stem-loop sequence sma-mir-2f

Accession

MI0027287 (change log)

Description

Schistosoma mansoni miR-2f stem-loop

Literature search

4 open access papers mention sma-mir-2f
(10 sentences)

Stem-loop

      ua  u     ug  uc      a   ug      g  aau 
5' cga  cc ggugu  au  uggcug gau  aggcag aa   a
   |||  || |||||  ||  |||||| |||  |||||| ||   a
3' guu  gg ccaua  ua  accgac cug  uccguu uu   a
      gc  c     gu  ua      a   --      g  aac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WTSI5): Chr_5: 1982640-1982726 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sma-mir-2f

• sma-mir-71b: Chr_5: 1982759-1982850 [-]
• sma-mir-2f: Chr_5: 1982640-1982726 [-]
• sma-mir-2d: Chr_5: 1982526-1982613 [-]
• sma-mir-2c: Chr_5: 1982423-1982497 [-]

Database links

• miRBase Tracker:MI0027287

Mature sequence sma-miR-2f-3p

• Accession: MIMAT0033691
• Sequence: 60 - ucacagccaauauugauaccc - 80
• Evidence: experimental; Illumina [1], SOLiD [1]

References

1. PMID:24069470 "Sex-biased expression of microRNAs in Schistosoma mansoni" Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M PLoS Negl Trop Dis. 7:e2402(2013).