miRBase entry: pxy-mir-8488

Stem-loop pxy-mir-8488


Accession
MI0027291
Description
Plutella xylostella pxy-mir-8488 precursor miRNA

Literature search
1 open access papers mention pxy-mir-8488
(1 sentences)

Sequence

13 reads, 510 reads per million, 4 experiments
aaaauguuagucuauggucaacAGCUGUCAGUUUCUUAGUAGAUAaguuuauaauucuaucacugggaaacugauacugguugucuauggucuauaacuacaucau
...(((((((.((((((.((((((.(((((((((((((((.((((((((...)))).))))))))))))))))))))).)))).)))))).))).....))))...

Structure
aaa    -----   u      u    -  C               A    -    u 
   augu     uag cuaugg caac AG UGUCAGUUUCUUAGU GAUA aguu  
   ||||     ||| |||||| |||| || ||||||||||||||| |||| |||| a
   uaca     auc gguauc guug uc auagucaaaggguca cuau uuaa  
uac    ucaau   u      u    g  -               -    c    u 


Annotation confidence Not enough data
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Genome context
scaffold_83: 422117-422222 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pxy-mir-8488
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pxy-miR-8488

Accession MIMAT0033695
Description Plutella xylostella pxy-miR-8488 mature miRNA
Sequence 23 - AGCUGUCAGUUUCUUAGUAGAUA - 45
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24236051
    Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
    Liang P, Feng B, Zhou X, Gao X
    PLoS One (2013) 8:e78787