miRBase entry: pxy-mir-8489a

Stem-loop pxy-mir-8489a


Accession
MI0027292
Description
Plutella xylostella pxy-mir-8489a precursor miRNA
Gene family
MIPF0002034; mir-8489


Sequence

59 reads, 2472 reads per million, 4 experiments
aaauggccaauuuagugGCCGUUACCUCUGAGCUUGUAuguccauaaauucaucCAAAUUCAGAGGUAACGGCACAcuacauuaggcuacug
...((((((((.((((((((((((((((((((.(((.(((..........))).))).))))))))))))))).))))).))).)))))...

Structure
aaa     -   u     -               C   U   ucca 
   uggcc aau uagug GCCGUUACCUCUGAG UUG Aug    u
   ||||| ||| ||||| ||||||||||||||| ||| |||     
   aucgg uua aucAC CGGCAAUGGAGACUU AAC uac    a
guc     a   c     A               A   c   uuaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_70: 783516-783607 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pxy-mir-8489a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pxy-miR-8489a-5p

Accession MIMAT0033696
Description Plutella xylostella pxy-miR-8489a-5p mature miRNA
Sequence 18 - GCCGUUACCUCUGAGCUUGUA - 38
Evidence experimental
Illumina [1]

Mature pxy-miR-8489a-3p

Accession MIMAT0033697
Description Plutella xylostella pxy-miR-8489a-3p mature miRNA
Sequence 55 - CAAAUUCAGAGGUAACGGCACA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24236051
    Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
    Liang P, Feng B, Zhou X, Gao X
    PLoS One (2013) 8:e78787