Stem-loop sequence pxy-mir-8504

Accession

MI0027309 (change log)

Description

Plutella xylostella miR-8504 stem-loop

Stem-loop

   aua  u           cu                uu      g   c    ga   g   u  cgg    -   a 
5'    ca guauacagggu  ccgugcaaguauggau  aaugaa ggg ugac  agg acu gu   uuuc cca a
      || |||||||||||  ||||||||||||||||  |||||| ||| ||||  ||| ||| ||   |||| |||  
3'    gu cauauguccua  ggcauguucauaccua  uuacuu cuc auug  ucc uga ca   aagg ggu g
   gca  c           ug                cc      a   a    ag   a   -  --a    u   u 

Deep sequencing

24 reads, 625 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (1.0): scaffold_98: 791835-791984 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pxy-mir-8504

• pxy-mir-8526: scaffold_98: 797006-797200 [-]
• pxy-mir-8504: scaffold_98: 791835-791984 [-]
• pxy-mir-8520: scaffold_98: 782739-782833 [-]

Database links

• miRBase Tracker:MI0027309

Mature sequence pxy-miR-8504

• Accession: MIMAT0033716
• Sequence: 114 - ccauccauacuuguacgggu - 133
• Evidence: experimental; Illumina [1]

References

1. PMID:24236051 "Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)" Liang P, Feng B, Zhou X, Gao X PLoS One. 8:e78787(2013).