Stem-loop sequence pxy-mir-8517a

Accession

MI0027332 (change log)

Description

Plutella xylostella miR-8517a stem-loop

Gene family

MIPF0002077; mir-8517

Literature search

1 open access papers mention pxy-mir-8517a
(1 sentences)

Stem-loop

   cca     u                     u          ga   a       g       c    a       a        a 
5'    uauag cuagcccccuuauucauaaaa aguuagugga  cuu agcuauu aacuguu uguc cucuuug cagagaac a
      ||||| ||||||||||||||||||||| ||||||||||  ||| ||||||| ||||||| |||| ||||||| |||||||| u
3'    auauc gauugggggaauaaguauuuu ucaauuaccu  gaa ucgauaa uugacaa acag gagagac guuucuug u
   uac     u                     u          gc   a       g       a    g       a        u 

Deep sequencing

314 reads, 8e+03 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (1.0): scaffold_244: 75865-76037 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pxy-mir-8517a

• pxy-mir-8497: scaffold_244: 76387-76574 [+]
• pxy-mir-8517a: scaffold_244: 75865-76037 [-]

Database links

• miRBase Tracker:MI0027332

Mature sequence pxy-miR-8517a

• Accession: MIMAT0033743
• Sequence: 51 - uauugaacuguucugucacucuuug - 75
• Deep sequencing: 16 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24236051 "Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)" Liang P, Feng B, Zhou X, Gao X PLoS One. 8:e78787(2013).