Stem-loop sequence pxy-mir-8520

Accession

MI0027353 (change log)

Description

Plutella xylostella miR-8520 stem-loop

Stem-loop

   cuu      u           a              u    cag  a 
5'    agcccc ucucccacuau cgacucucuggcga gcca   cg c
      |||||| ||||||||||| |||||||||||||| ||||   ||  
3'    uugggg agagggugaua gcugagagaccgcu cggu   gc u
   aau      u           c              u    -ca  a 

Deep sequencing

80 reads, 2.1e+03 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (1.0): scaffold_98: 782739-782833 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pxy-mir-8520

• pxy-mir-8504: scaffold_98: 791835-791984 [-]
• pxy-mir-8520: scaffold_98: 782739-782833 [-]
• pxy-mir-8530: scaffold_98: 774474-774560 [-]

Database links

• miRBase Tracker:MI0027353

Mature sequence pxy-miR-8520-5p

• Accession: MIMAT0033758
• Sequence: 19 - uauacgacucucuggcgaugcc - 40
• Deep sequencing: 19 reads, 4 experiments
• Evidence: experimental; Illumina [1]

Mature sequence pxy-miR-8520-3p

• Accession: MIMAT0033759
• Sequence: 58 - cuucgccagagagucgcauagu - 79
• Deep sequencing: 59 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24236051 "Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)" Liang P, Feng B, Zhou X, Gao X PLoS One. 8:e78787(2013).