miRBase entry: pxy-mir-8536b

Stem-loop pxy-mir-8536b


Accession
MI0027384
Description
Plutella xylostella pxy-mir-8536b precursor miRNA
Gene family
MIPF0002030; mir-8536


Sequence

44 reads, 1953 reads per million, 4 experiments
uaaucugacauuagucaGUGACAUAGCUGGGAUAAGUUagugugaaaugaaaCCUAUCUCAGCUAUGUCACUAucucgugucaggaau
....(((((((.((..((((((((((((((((((.(((.((.....))..))).))))))))))))))))))..)).)))))))....

Structure
uaau       u  uc                  A   -a  g 
    cugacau ag  aGUGACAUAGCUGGGAUA GUU  gu u
    ||||||| ||  |||||||||||||||||| |||  || g
    gacugug uc  UCACUGUAUCGACUCUAU Caa  ua a
uaag       c  uA                  C   ag  a 


Annotation confidence Not enough data
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Genome context
scaffold_50: 599933-600020 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pxy-mir-8536b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pxy-miR-8536b-5p

Accession MIMAT0033789
Description Plutella xylostella pxy-miR-8536b-5p mature miRNA
Sequence 18 - GUGACAUAGCUGGGAUAAGUU - 38
Evidence experimental
Illumina [1]

Mature pxy-miR-8536b-3p

Accession MIMAT0033790
Description Plutella xylostella pxy-miR-8536b-3p mature miRNA
Sequence 53 - CCUAUCUCAGCUAUGUCACUA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24236051
    Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
    Liang P, Feng B, Zhou X, Gao X
    PLoS One (2013) 8:e78787