Stem-loop sequence pxy-mir-8521b-5

Accession

MI0027394 (change log)

Description

Plutella xylostella miR-8521b-5 stem-loop

Gene family

MIPF0001871; mir-8521

Stem-loop

   ucc   u         cuugucuc    g  gc                     - gg 
5'    ucu guguucguu        uggc cg  agucagaauucgggacaagcc c  a
      ||| |||||||||        |||| ||  ||||||||||||||||||||| |   
3'    aga cauaaguaa        accg gc  ucaguuuuaagcccuguucgg g  g
   gca   c         --------    -  --                     u gc 

Deep sequencing

160 reads, 4.05e+03 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (1.0): scaffold_127: 916974-917079 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pxy-mir-8521b-5

• pxy-mir-8521b-5: scaffold_127: 916974-917079 [+]
• pxy-mir-8521a-3: scaffold_127: 917960-918024 [+]
• pxy-mir-8521b-6: scaffold_127: 919385-919480 [+]
• pxy-mir-8521b-3: scaffold_127: 920219-920290 [+]
• pxy-mir-8521b-11: scaffold_127: 921914-922002 [+]
• pxy-mir-8521b-7: scaffold_127: 923694-923785 [+]
• pxy-mir-8521b-4: scaffold_127: 925344-925452 [+]

Database links

• miRBase Tracker:MI0027394

Mature sequence pxy-miR-8521b

• Accession: MIMAT0033751
• Sequence: 66 - cuugucccgaauuuugacucggcc - 89
• Deep sequencing: 1275 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24236051 "Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)" Liang P, Feng B, Zhou X, Gao X PLoS One. 8:e78787(2013).