Stem-loop sequence pxy-mir-8521a-5

Accession

MI0027395 (change log)

Description

Plutella xylostella miR-8521a-5 stem-loop

Gene family

MIPF0001871; mir-8521

Stem-loop

   --u   cuu  g u      u  -c  --ug c    c                     - gg 
5'    ccu   gu u cguucu gu  uc    g gcgg agucagaauucgggacgagcc c  a
      |||   || | |||||| ||  ||    | |||| ||||||||||||||||||||| |   
3'    gga   ca a gcaaga ca  ag    c cguc ucaguuuuaagcccuguucgg g  g
   cuu   --u  g u      c  aa  uaaa -    -                     u gc 

Deep sequencing

145 reads, 3.68e+03 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (1.0): scaffold_127: 933148-933265 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pxy-mir-8521a-5

• pxy-mir-8521b-7: scaffold_127: 923694-923785 [+]
• pxy-mir-8521b-4: scaffold_127: 925344-925452 [+]
• pxy-mir-8521b-9: scaffold_127: 927294-927386 [+]
• pxy-mir-8521b-8: scaffold_127: 929984-930055 [+]
• pxy-mir-8521b-2: scaffold_127: 930604-930701 [+]
• pxy-mir-8521a-5: scaffold_127: 933148-933265 [+]
• pxy-mir-8521b-10: scaffold_127: 934840-934904 [+]
• pxy-mir-8521b-1: scaffold_127: 936871-936942 [+]
• pxy-mir-8543: scaffold_127: 938549-938622 [+]

Database links

• miRBase Tracker:MI0027395

Mature sequence pxy-miR-8521a

• Accession: MIMAT0033752
• Sequence: 66 - cuugucccgaauuuugacucugcc - 89
• Deep sequencing: 502 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24236051 "Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)" Liang P, Feng B, Zhou X, Gao X PLoS One. 8:e78787(2013).