Stem-loop pxy-mir-2b

Accession

MI0027399

Description

Plutella xylostella pxy-mir-2b precursor miRNA

Gene family

MIPF0000049; mir-2

Literature search

1 open access papers mention pxy-mir-2b
(1 sentences)

Sequence

112 reads, 4575 reads per million, 4 experiments

ucucgugugccuuccaggacagagcgauguggccgcgccgucaaagccgguugaucauaggucauugcgcagcuaUCACAGCCAGCUUUGAUGAGCACggccgcauugccagccacccagcccacgccu
...((((.((......((.(.(.((((((((((((.(((((((((((.(((((...((((.(........).))))..))))).))))))))).)).))))))))))))).))).....)).))))...

Structure

ucu    u  cuucca  a a a            c  -         c     auc    g cau 
   cgug gc      gg c g gcgauguggccg gc cgucaaagc gguug   auag u   u
   |||| ||      || | | |||||||||||| || ||||||||| |||||   |||| |    
   gcac cg      cc g c cguuacgccggC CG GUAGUUUCG CCGAC   Uauc a   g
ucc    c  -accca  - a -            A  A         A     -AC    g cgc 

Annotation confidence Not enough data

Genome context

scaffold_168: 4436-4564 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-2b

Mature pxy-miR-2b

• Accession: MIMAT0033803
• Description: Plutella xylostella pxy-miR-2b mature miRNA
• Sequence: 76 - UCACAGCCAGCUUUGAUGAGCAC - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787