Stem-loop sequence pxy-mir-2b

Accession

MI0027399 (change log)

Description

Plutella xylostella miR-2b stem-loop

Gene family

MIPF0000049; mir-2

Literature search

1 open access papers mention pxy-mir-2b
(1 sentences)

Stem-loop

   ucu    u  cuucca  aca a            c  -         c     auc    g cau 
5'    cgug gc      gg   g gcgauguggccg gc cgucaaagc gguug   auag u   u
      |||| ||      ||   | |||||||||||| || ||||||||| |||||   |||| |    
3'    gcac cg      cc   c cguuacgccggc cg guaguuucg ccgac   uauc a   g
   ucc    c  -accca  -ga -            a  a         a     -ac    g cgc 

Deep sequencing

249 reads, 6.68e+03 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (1.0): scaffold_168: 4436-4564 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pxy-mir-2b

• pxy-mir-2b: scaffold_168: 4436-4564 [-]
• pxy-mir-2a: scaffold_168: 3771-3862 [-]

Database links

• miRBase Tracker:MI0027399

Mature sequence pxy-miR-2b

• Accession: MIMAT0033803
• Sequence: 76 - ucacagccagcuuugaugagcac - 98
• Deep sequencing: 227 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24236051 "Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)" Liang P, Feng B, Zhou X, Gao X PLoS One. 8:e78787(2013).