Stem-loop sequence pxy-mir-8543

Accession

MI0027402 (change log)

Description

Plutella xylostella miR-8543 stem-loop

Stem-loop

   uga      a           -c         u  ag 
5'    accuua aggaggaucaa  uugauaacu ag  u
      |||||| |||||||||||  ||||||||| ||   
3'    uggaau uucuucuaguu  aacuauuga uc  a
   guc      a           uc         -  ag 

Deep sequencing

2 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (1.0): scaffold_127: 938549-938622 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pxy-mir-8543

• pxy-mir-8521b-8: scaffold_127: 929984-930055 [+]
• pxy-mir-8521b-2: scaffold_127: 930604-930701 [+]
• pxy-mir-8521a-5: scaffold_127: 933148-933265 [+]
• pxy-mir-8521b-10: scaffold_127: 934840-934904 [+]
• pxy-mir-8521b-1: scaffold_127: 936871-936942 [+]
• pxy-mir-8543: scaffold_127: 938549-938622 [+]
• pxy-mir-8493: scaffold_127: 944000-944075 [+]

Database links

• miRBase Tracker:MI0027402

Mature sequence pxy-miR-8543

• Accession: MIMAT0033806
• Sequence: 45 - uuaucaacuuugaucuucuuau - 66
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:24236051 "Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)" Liang P, Feng B, Zhou X, Gao X PLoS One. 8:e78787(2013).