miRBase entry: pxy-mir-9b-1

Stem-loop pxy-mir-9b-1


Accession
MI0027403
Description
Plutella xylostella pxy-mir-9b-1 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
1 open access papers mention pxy-mir-9b-1
(1 sentences)

Sequence

123 reads, 4247 reads per million, 4 experiments
ugaagcugcaugggcgcggcucggcUCUUUGGUAUCCUAGcuguaggcguuuacgaagcggccUAAAGUUAUGGUACCGAAGUCCcgggccucgccauucgcuacg
...(((.(.(..((((.(((((((..((((((((((.(((((.(((((((((...)))).))))).))))).))))))))))..))))))).))))..)))))...

Structure
uga   u c ug    c       cU          C     g     -    a 
   agc g a  ggcg ggcucgg  CUUUGGUAUC UAGcu uaggc guuu  
   ||| | |  |||| |||||||  |||||||||| ||||| ||||| |||| c
   ucg c u  ccgc ccgggcC  GAAGCCAUGG AUUGA AUccg cgaa  
gca   - - ua    u       CU          U     A     g    g 


Annotation confidence High
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Genome context
scaffold_287: 26021-26126 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pxy-mir-9b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pxy-miR-9b-5p

Accession MIMAT0033807
Description Plutella xylostella pxy-miR-9b-5p mature miRNA
Sequence 26 - UCUUUGGUAUCCUAG - 40
Evidence experimental
Illumina [1]

Mature pxy-miR-9b-3p

Accession MIMAT0033808
Description Plutella xylostella pxy-miR-9b-3p mature miRNA
Sequence 64 - UAAAGUUAUGGUACCGAAGUCC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24236051
    Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
    Liang P, Feng B, Zhou X, Gao X
    PLoS One (2013) 8:e78787