miRBase entry: atr-MIR8552a

Stem-loop atr-MIR8552a


Accession
MI0027426
Description
Amborella trichopoda atr-MIR8552a precursor miRNA
Gene family
MIPF0001863; MIR8552


Sequence

450 reads, 2016 reads per million, 4 experiments
gcugagauuagccuacuagcucaugugaauauaugagcccaacgaccuagauugaaucuggauugaucugacggucaugaccucauuuuguauuugaauuuuaauaauuuuuguacgaaucaaaauaacuugaaaucuuagguguguguucuucaaaaauaggauaaucuacuaaaaauaucaaaaaaauaauuuucaaguaauaaauugaucaaaauacucucgaaacguuucaaggguauuuuggucuuuuuuaugaauuauuuuuaaaauauuuuuauuaggugcgucuugaugauaagaauggacacuuaaaauuuugaauuauuuggauguguaaaaaaaaaaaucaaaauucaaacaCGAAAUGAGGUCGUGACCGUCAGAucaggcuagauuaaucuggguuguuaggcucuauguucauaugagcuagugggcuaauuucagc
(((((((((((((((((((((((((((((((((.(((((.(((((((((((((((.(((((..((((((((((((((((((((((((((((.((((((((((.((..(((((.((((.(((.((((((.(((((((.((((((((.(((((((......((((((.(((((.(((((((((...(((((((((((....((((.(((..((((((((((((((.(((....))).))))))))))))))))).)))))))))))))))...))))))))).)))))..)))))).....))))))).)))))))).))))))).)))))).))).))))..)))))..)).)))))))))).))))))))))))))))))))))))))))..)))))))))))))))))))).))))))))))))))))))))))))))))))))))))))

Structure
                                 u     c               a     au                            a          a  aa     -g    a   a      c       c        g       caaaaa      -a     c         caa           ucaa    u   uu              c   a 
gcugagauuagccuacuagcucaugugaauaua gagcc aacgaccuagauuga ucugg  ugaucugacggucaugaccucauuuugu uuugaauuuu au  uuuuu  uacg auc aaauaa uugaaau uuaggugu uguucuu      uaggau  aucua uaaaaauau   aaaaauaauuu    guaa aaa  gaucaaaauacucu gaa c
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||  |||||||||||||||||||||||||||| |||||||||| ||  |||||  |||| ||| |||||| ||||||| |||||||| |||||||      ||||||  ||||| |||||||||   |||||||||||    |||| |||  |||||||||||||| |||  
cgacuuuaaucgggugaucgaguauacuuguau cucgg uuguugggucuaauu agauc  acuAGACUGCCAGUGCUGGAGUAAAGCa aaacuuaaaa ua  aaaaa  augu uag uuuauu aguuuua aauucaca guaagaa      guucug  uggau auuuuuaua   uuuuuauuaag    uauu uuu  cugguuuuauggga cuu g
                                 -     a               -     gg                            c          c  aa     aa    g   g      a       a        g       -uagua      cg     u         aaa           ----    u   --              a   u 


Annotation confidence Not enough data
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Genome context
scaffold00007: 8707919-8708369 [+]

Database links

Mature atr-miR8552a

Accession MIMAT0033823
Description Amborella trichopoda atr-miR8552a mature miRNA
Sequence 364 - CGAAAUGAGGUCGUGACCGUCAGA - 387
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089