miRBase entry: atr-MIR8554

Stem-loop atr-MIR8554


Accession
MI0027428
Description
Amborella trichopoda atr-MIR8554 precursor miRNA


Sequence

1999 reads, 5255 reads per million, 3 experiments
gaaauuuaugcucaugucccccuaaauuuauguuauuaaaaauauaccccugaaaauauuguauuuuauguucauucgccuuuuuuauuuuuauuuauuuauuuuucaaaauugucucacuucggaccuucaagguuugaagucacaauuuaUGCGAUGACUUUGGAUCUUGAGGAucaaaaguaauucuuucaacugauggcuuuuaacuuugaagauucgaaguuaucuuuuggcuucugaccuucaaggucugaagucaagauucaugucucaaaauauaggucuuggcuuuagaccuucaagguccgaagccaaagacuuuaaaaaaauuuauuggcuuuaguaguuauucuaggauagacuucaauuuuuuugaagucuuuggcuucguacucugaagguccaaugccaagauugauacgagucuugauuucagaucuucaaggucugaagccaagagaugaauuuggaucucgaaggucugcagucauaauuaaaaacaauuauuucaaaucuucaaguucuggagucauaacaacaauuaugauuuuggauuuugaaggucugaaguggggcauuuugggagaaaauagaaguugauaaaaugggucuugacguaauauacggcauuuuggaggaaucguuuaaauaacagaauuauuagggggacaugagcauaaauuuc
(((((((((((((((((((((((((.....(((((((.(((.....((((..(((((.((((((.((((((.((...((((.(((((((....(((((((.(((((((((((.((((((((((((((((((((((((((((((((.((((..((..(((((((((((.(((((((((...((((((((.(((......((((((.....((((((.((((((((.(((((((((((((((.((((((.((((((((((((((((((((.((((..........(((((((((.((.((((((((.(((.(((((((((((((((((((((((((....((((....(((.....)))....)).))..))))))))))))))))))))))))).))).)))))))).)).))))))))))))).)))))))))))))))))))).)))))).))))))))))))))).))))))))))))))......))))))......))).))))))))...))))))))).)))))))))))..))..)))).))))))))))))))))))))))))))))))))))))))))))))))))))....))))))).))))..)))))))).)))))).))))))).)).....))).)))))))......)))))))))))))))))))))))))

Structure
                         -auuua       a   auaua  -  ug     a      u      u  uuc    u       uuua       a           u                                c    ua  CG           U         caa        c   caacug      -uuuaa      a        g               u      c                    a    ucaaaauaua         u  a        a   c                         uauu  -  uuag   u 
gaaauuuaugcucaugucccccuaa      uguuauu aaa     cc cc  aaaau uuguau uuaugu ca   gccu uuuuauu    uuuauuu uuuuucaaaau gucucacuucggaccuucaagguuugaaguca aauu  UG  AUGACUUUGGA CUUGAGGAu   aaguaauu uuu      auggcu      cuuuga gauucgaa uuaucuuuuggcuuc gaccuu aaggucugaagucaagauuc uguc          ggucuuggc uu gaccuuca ggu cgaagccaaagacuuuaaaaaaauu    gg cu    uag u
|||||||||||||||||||||||||      ||||||| |||     || ||  ||||| |||||| |||||| ||   |||| |||||||    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||  ||  ||||||||||| |||||||||   |||||||| |||      ||||||      |||||| |||||||| ||||||||||||||| |||||| |||||||||||||||||||| ||||          ||||||||| || |||||||| ||| |||||||||||||||||||||||||    || ||    ||| a
cuuuaaauacgaguacagggggauu      acaauaa uuu     gg gg  uuuua ggcaua aaugca gu   uggg aaaauag    agauaaa agaggguuuua cggggugaagucuggaaguuuuagguuuuagu uuaa  ac  uacugaggucu gaacuucua   uuuauuaa aaa      uacuga      gaagcu cuagguuu aguagagaaccgaag cuggaa uucuagacuuuaguucugag auag          uuagaaccg aa cuggaagu uca gcuucgguuucugaaguuuuuuuaa    uc ga    auc u
                         auuaag       a   gcuaa  a  --     c      u      -  -uc    u       uuga       -           -                                a    ca  aa           u         aac        c   aauuaa      cgucug      -        a               u      c                    c    ----------         u  c        c   u                         --cu  a  uagg   u 


Annotation confidence Low
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Genome context
scaffold00009: 5608266-5608953 [+]

Database links

Mature atr-miR8554

Accession MIMAT0033825
Description Amborella trichopoda atr-miR8554 mature miRNA
Sequence 153 - UGCGAUGACUUUGGAUCUUGAGGA - 176
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089