miRBase entry: atr-MIR8555

Stem-loop atr-MIR8555


Accession
MI0027429
Description
Amborella trichopoda atr-MIR8555 precursor miRNA


Sequence

3318 reads, 2346 reads per million, 4 experiments
aguuggggagagacuugcugcugacgaucuuuauuguuuuuagauuuuauuuuauauuuucaucuucaagcaacauacaccacggggccuuauccuguagaugucuaguuaacucguuccuaaccaagacaaagagguuaguauugaguccauaucucuuugcuuugauuuuagaggAGUUAACUAGGCAUCUAUAGGAUGaggccuugugguguauguugugugaggaugacauaguuuugauuaauaagauuagagaugguauaaacacaaauuuagaacu
(((.((.(((...))).)))))((((((....))))))(((((((((...(((((((..(((((((((.((((((((((((((((((((((((((((((((((((((((((((((.((...((.((((.(((((((((...............))))))))).)))).))...)).)))))))))))))))))))))))))))))))))))))))))))))).)))))))))(((..((((((((.....))))))))))))))))))...)))))))))...

Structure
aguuggggagagacuugcugcugacgaucuuuauuguu         uau       ---------------------------uu         a                                              g  ccu  c    a         uaguau 
                                      uuuagauuu   uuuauau                             ucaucuuca gcaacauacaccacggggccuuauccuguagaugucuaguuaacuc uu   aa caag caaagaggu      u
                                      |||||||||   |||||||                             ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||   || |||| |||||||||      g
                                      agauuuaaa   aaauaug                             aguaggagu uguuguaugugguguuccggaGUAGGAUAUCUACGGAUCAAUUGAg ag   uu guuu guuucucua      a
-----------------------------------uca         cac       guagagauuagaauaauuaguuuugauac         g                                              g  auu  a    c         uaccug 


Annotation confidence Not enough data
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Genome context
scaffold00011: 6531643-6531925 [+]

Database links

Mature atr-miR8555

Accession MIMAT0033826
Description Amborella trichopoda atr-miR8555 mature miRNA
Sequence 178 - AGUUAACUAGGCAUCUAUAGGAUG - 201
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089