miRBase entry: atr-MIR8556

Stem-loop atr-MIR8556


Accession
MI0027430
Description
Amborella trichopoda atr-MIR8556 precursor miRNA


Sequence

330 reads, 277 reads per million, 4 experiments
gaguuuccuauuuugugggauuacuauuguauugagauuuuguuuccUAAAAGACAGGAAUUGUAACUcuauaaaucuuugauuguagaauuacaauaaaggaaagagugaagagagagaaaacgaucaacacgacauauaugugguucgggaaugaugccuacgucuauggaggguaaaccaguaucucauucauugggauugcucuaguuuacuagagauuuguagaguuacgauucuugucuuuuaggaaacaaauuuuauuacaacuguaauuccacaaaauaugaaauuc
(((((((.((((((((((((((((..(((((.((((((((.(((((((((((((((((((((((((((((((((((((((.((((((....))))))..........(((..((..(......)..))..)))..((((.((((((((((....))).))).)))).))))...(((((((.(((((((((.....))))).))))...)))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))..)))))))))))))))).)))))))

Structure
       c                ua     u        u                                       gauuguagaauuacaauaaaggaaagagugaagagagagaaaacgaucaacacgacauauaugugguucgggaaugaugccuacgucuauggag       --c    -     u 
gaguuuc uauuuugugggauuac  uugua ugagauuu guuuccUAAAAGACAGGAAUUGUAACUcuauaaaucuuu                                                                                              gguaaac   agua ucuca u
||||||| ||||||||||||||||  ||||| |||||||| |||||||||||||||||||||||||||||||||||||||                                                                                              |||||||   |||| ||||| c
cuuaaag auaaaacaccuuaaug  aacau auuuuaaa caaaggauuuucuguucuuagcauugagauguuuagaga                                                                                              ucauuug   ucgu agggu a
       u                uc     u        -                                       ----------------------------------------------------------------------------------------------       auc    u     u 


Annotation confidence Not enough data
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Genome context
scaffold00013: 1587032-1587326 [+]

Database links

Mature atr-miR8556

Accession MIMAT0033827
Description Amborella trichopoda atr-miR8556 mature miRNA
Sequence 48 - UAAAAGACAGGAAUUGUAACU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089