Stem-loop atr-MIR8559

Accession

MI0027434

Description

Amborella trichopoda atr-MIR8559 precursor miRNA

Sequence

529 reads, 602 reads per million, 4 experiments

uauauauauauauauaugggaauggauccuaucagcccacgggcgaacugcuacagugucaaccaacgguccagauuaaaucugggccgaucugaggucgugaccauuggaucggacccauauucaauuugggccuuuggcUGACACUGUAGUAGUCAACCCGUGggcaaacaggcuucuuuccuucuauauauauauaua
..((((((((((((((.(((((.(((.(((....(((((((((...(((((((((((((((.((((.((((((((((.(((.((((((((((((((((....))).))))))))).)))).))).)))))))))).)))).)))))))))))))))...)))))))))....))).))).)))))..))))))))))))))

Structure

ua              -u     u   u   auca         cga               a    c          a   c    -         -   c 
  uauauauauauaua  gggaa gga ccu    gcccacggg   acugcuacaguguca ccaa gguccagauu aau uggg ccgaucuga ggu g
  ||||||||||||||  ||||| ||| |||    |||||||||   ||||||||||||||| |||| |||||||||| ||| |||| ||||||||| |||  
  auauauauauauau  uccuu cuu gga    cggGUGCCC   UGAUGAUGUCACAGU gguu ccggguuuaa uua accc ggcuagguu cca u
--              cu     u   c   caaa         AAC               c    u          c   u    a         a   g 

Annotation confidence High

Genome context

scaffold00017: 4559611-4559811 [-]

Mature atr-miR8559

• Accession: MIMAT0033831
• Description: Amborella trichopoda atr-miR8559 mature miRNA
• Sequence: 142 - UGACACUGUAGUAGUCAACCCGUG - 165
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089