miRBase entry: atr-MIR8617

Stem-loop atr-MIR8617


Accession
MI0027435
Description
Amborella trichopoda atr-MIR8617 precursor miRNA


Sequence

874 reads, 1777 reads per million, 4 experiments
gcguugguaaucauaaaaauuaguuaagggguggggucuauacaagguuguagcauuacuugcagaaguaagguugcgauguucuacauaguUCAUUUUAGUUGGAUGGUGUAGAUuuaacacgucuuuuaagauagugucaaaaagugauacgccuuuuaagauagugcuaaaucuacacuguucaaauaaaaugaaugauguagauuacugcaaucuuacuucuacaaguacgguugcaaccuuauauaaacuuuuuauuaguuaagaauaaaagcaaaaugauaaucuuuugu
.....(((.(((((.....((((((((.....(((((.((((.(((((((((((..((((((.(((((((((((((((.((.(((((((.((((((((((.((((((((((((((((((.((((((((..(((...((((((.....))))))..)))..))))).))).)))))))))))))))))).)))))))))).))))))).)).))))))))))))))).))))))..))))))))))).)))).)))))...)))))))).............))))).)))......

Structure
-gcguu   a     --------aaaaa        ggggu     c    c           au      c               a  u       a          G                  a   -     uu   aua      a 
      ggu aucau             uuaguuaa     ggggu uaua aagguuguagc  uacuug agaaguaagguugcg ug ucuacau guUCAUUUUA UUGGAUGGUGUAGAUuua cac gucuu  aag   guguca a
      ||| |||||             ||||||||     ||||| |||| |||||||||||  |||||| ||||||||||||||| || ||||||| |||||||||| |||||||||||||||||| ||| |||||  |||   |||||| a
      cua uagua             aauugauu     uuuca auau uuccaacguug  augaac ucuucauucuaacgu au agaugua uaaguaaaau aacuugucacaucuaaau gug uagaa  uuc   cauagu a
uguuuu   a     aaacgaaaauaag        --auu     a    a           gc      a               c  u       g          a                  c   a     uu   -cg      g 


Annotation confidence Low
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Genome context
scaffold00018: 135389-135684 [-]

Database links

Mature atr-miR8617

Accession MIMAT0033832
Description Amborella trichopoda atr-miR8617 mature miRNA
Sequence 93 - UCAUUUUAGUUGGAUGGUGUAGAU - 116
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089