miRBase entry: atr-MIR8562a

Stem-loop atr-MIR8562a


Accession
MI0027438
Description
Amborella trichopoda atr-MIR8562a precursor miRNA
Gene family
MIPF0001861; MIR8562


Sequence

3798 reads, 5188 reads per million, 4 experiments
ccuauaggcgaaaaugaacacugauuucgccuacccucaucaccguccaaaguucaucgcacggucacaauuguuugguaguguuucauuuuuaauuuuuuuuuuuuacaaaUCGGAAUGAUCUGAAAUUUGGAGCauguauucauuaaaaauaagcaaaacuaggaaaaauauaaaaaaaaaaaauuacaugaaauaaauugaccaaaauaccaucgaaaagucucaaggguauuuuggucaauuuuguuuucgugaauuauuuguuuuauauuuucauuaggugcgucucacuaagauguacacacguuccaaauuuuagaucauuccgauucguagaaaaaaaaaugaaaaaugaaacauuaccgaacaaucgugaccgugcgaugaaauauagacggugaugagggcaagcgaaaucacuguucauuuucuccuauagg
((((((((.(((((((((((.(((((((((...((((((((((((((.....((((((((((((((((.((((((((((((((((((((((((...(((((((((((((.((((((((((((((((((((((((((.(((.....................((((..(((((((((((..(((.((((.(((((((.(((((((((((((((((...((......))...)))))))))))))))))...))))))))))).))).)))))))))))..))))((((((((.....))))))))))).)))))))))))))))))))))))))).)))))))))))))..)))))))))))))))))))))))).)))))))))))))))).....))))))))))))))...))))))))).))))))))))).))))))))

Structure
        c           c         cua              caaag                a                        aau             a                          a   auucauuaaaaauaagcaaaa    ga           aa   a    a       --u                 auc  aa 
ccuauagg gaaaaugaaca ugauuucgc   cccucaucaccguc     uucaucgcacggucac auuguuugguaguguuucauuuuu   uuuuuuuuuuuac aaUCGGAAUGAUCUGAAAUUUGGAGC ugu                     cuag  aaaauauaaaa  aaa aauu caugaaa   aaauugaccaaaauacc   ga  a
|||||||| ||||||||||| |||||||||   ||||||||||||||     |||||||||||||||| ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||| |||                     ||||  |||||||||||  ||| |||| |||||||   |||||||||||||||||   ||   
ggauaucc cuuuuacuugu acuaaagcg   gggaguaguggcag     aaguagcgugccagug uaacaagccauuacaaaguaaaaa   aaaaaaaaagaug uuagccuuacuagauuuuaaaccuug aca                     gauu  uuuuauauuuu  uuu uuaa gugcuuu   uuuaacugguuuuaugg   cu  g
        u           c         aac              auaua                c                        -gu             c                          c   cauguagaaucacucugcgug    ac           -g   a    -       ugu                 gaa  cu 


Annotation confidence Not enough data
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Genome context
scaffold00020: 3302096-3302538 [+]

Database links

Mature atr-miR8562a

Accession MIMAT0033836
Description Amborella trichopoda atr-miR8562a mature miRNA
Sequence 113 - UCGGAAUGAUCUGAAAUUUGGAGC - 136
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089