miRBase entry: atr-MIR8562c

Stem-loop atr-MIR8562c


Accession
MI0027440
Description
Amborella trichopoda atr-MIR8562c precursor miRNA
Gene family
MIPF0001861; MIR8562


Sequence

1421 reads, 2757 reads per million, 4 experiments
cggucagaguugucuaauaguuuuuuaauuuuuauuuuuuuucuauaaaUCAGAAUGAUCUGAAAUUUGGAGCguguguucauaaaaaauaggauaaucuaauaaaaauauaaaaauaaauagacuaaaauuccucugaaaauuugugagaguauuuuggucaauuuauauuuugaaauuuuuuuuuucauauuuuuauuaauugucucucacuaagauguacacgcacuccaaauuucagaucauuccgauuuauagaaaacaaauaaaaauugaaauacuagcguacaaucgugaccg
((((((..(((((....((((.(((((((((((((((.(((((((((((((.((((((((((((((((((((.((((((.(((.......((((((((.((((((((((((....((((((.(((((((((..((((.(.......).)))).))))))))).)))))).....((((.......)))))))))))))))))))))).)).......))).)))))).)))))))))))))))))))).))))))))))))).))))))))))))))).))))....)))))..))))))

Structure
      ga     cuaa    u               u             A                    C      u   aaaaaau  -      c            ----------------aaaa      a         uc    g aa 
cgguca  guugu    uagu uuuuaauuuuuauuu uuuucuauaaaUC GAAUGAUCUGAAAUUUGGAG gugugu cau       ag gauaau uaauaaaaauau                    auaaau gacuaaaau  cucu a  a
||||||  |||||    |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||       || |||||| ||||||||||||                    |||||| |||||||||  |||| |  u
gccagu  uaaca    auca aaaguuaaaaauaaa aaaagauauuuag cuuacuagacuuuaaaccuc cgcaca gua       uc cuguua auuauuuuuaua                    uauuua cugguuuua  gaga u  u
      gc     ugcg    u               c             c                    a      u   gaaucac  u      -            cuuuuuuuuuuaaaguuuua      a         -u    g gu 


Annotation confidence Not enough data
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Genome context
scaffold00221: 34564-34863 [+]

Database links

Mature atr-miR8562c

Accession MIMAT0033838
Description Amborella trichopoda atr-miR8562c mature miRNA
Sequence 50 - UCAGAAUGAUCUGAAAUUUGGAGC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089